optical mapping data (BioNano Genomics)
90
Structured Review
BioNano Genomics
optical mapping data
Optical Mapping Data, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/optical+mapping+data/optical+mapping+data/pmc12267650-499-0-0
Average 90 stars, based on 1 article reviews
Optical Mapping Data, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/optical+mapping+data/optical+mapping+data/pmc12267650-499-0-0
Average 90 stars, based on 1 article reviews
optical mapping data - by Bioz Stars,
2026-09
90/100 stars
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Hi-C:Article Title: Assembly and Annotation of the Tetraploid Salsola tragus (Russian Thistle) Genome. Article Snippet: .. PacBio HiFi reads were assembled and 15 scaffolded with Hi-C chromatin contact mapping and Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak Article Snippet: .. Hi-C sequencing reads (SRA accession SRR33578480 ) and Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak. Article Snippet: .. Hi-C sequencing reads (SRA accession SRR3357848036) and Generated:Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping Article Snippet: .. The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/genes16050536/s1 : Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the Article Title: Telomere-to-telomere genome assembly of linseed (Linum usitatissimum L.) for functional genomics and accelerated genetic improvement. Article Snippet: Additionally, 393.13 million reads (59.36 Gb) short reads of 2 9 150 PE data were produced using the Illumina NovaSeq 6000 platform. .. Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping. Article Snippet: .. Supplementary Materials: The following supporting information can be downloaded at https: //www.mdpi.com/article/10.3390/genes16050536/s1: Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the Sequencing:Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping Article Snippet: .. The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/genes16050536/s1 : Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping. Article Snippet: .. Supplementary Materials: The following supporting information can be downloaded at https: //www.mdpi.com/article/10.3390/genes16050536/s1: Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak Article Snippet: .. Hi-C sequencing reads (SRA accession SRR33578480 ) and Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak. Article Snippet: .. Hi-C sequencing reads (SRA accession SRR3357848036) and Comparison:Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping Article Snippet: .. The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/genes16050536/s1 : Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping. Article Snippet: .. Supplementary Materials: The following supporting information can be downloaded at https: //www.mdpi.com/article/10.3390/genes16050536/s1: Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the Variant Assay:Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping Article Snippet: .. The following supporting information can be downloaded at https://www.mdpi.com/article/10.3390/genes16050536/s1 : Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the Article Title: Toward a Kinh Vietnamese Reference Genome: Constructing a De Novo Genome Assembly Using Long-Read Sequencing and Optical Mapping. Article Snippet: .. Supplementary Materials: The following supporting information can be downloaded at https: //www.mdpi.com/article/10.3390/genes16050536/s1: Figure S1: Blood Genomic DNA Analysis; Figure S2: Karyotype analysis of donor VHG; Figure S3: VHG mitochondrial genome (mtDNA) generated by HiFi reads using Hifiasm tools; Figure S4: The assembly gap in the super scaffold 546 was filled by integrating long-read sequencing and physical mapping; Figure S5: The dotplot represents the co-linearity between VHG1.2 and the reference genomes hg38 or T2T using D-GENIES, with the filter option applied to remove sequences with identity < 75%; Figure S6: The dotplot represents the co-linearity between VHG1.2 and other assemblies as hg38, Han Chinese (HX1), Korean (AK1), and Japanese (JG1) using D-GENIES with the filter option applied to remove sequences with identity < 75%; Table S1: Summary of the raw HiFi sequencing read data; Table S2: Summary of the CCS data; Table S3: Summary of the other:Article Title: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair Article Snippet: Scaffolding:Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak Article Snippet: .. Hi-C sequencing reads (SRA accession SRR33578480 ) and Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak. Article Snippet: .. Hi-C sequencing reads (SRA accession SRR3357848036) and Biomarker Discovery:Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak Article Snippet: .. Hi-C sequencing reads (SRA accession SRR33578480 ) and Article Title: De Novo Genome Assembly and Annotation of the Arunachali Yak. Article Snippet: .. Hi-C sequencing reads (SRA accession SRR3357848036) and |